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ablang

AbLang: A language model for antibodies

ablang2

An antibody-specific language model focusing on NGL prediction

ablooper

Tool for modelling the CDRs of antibodies

anarci

Antibody Numbering and Antigen Receptor ClassIfication

antifold

Improved antibody structure-based design using inverse folding

binding-sites

calm

Protein language model trained on coding DNA

cesped

Cryo-EM Supervised Pose Estimation Dataset utilities

cogent

COnsistency of Gene Expression NeTworks

collaborationnetworkillustration

Creating Interactive visualisations of collaboration networks with JavaScript

coprinet

Deep learning for compound price prediction

deepcoy

delinker

densefs

develop

dlab-public

Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"

fragmenstein

Merging, linking and placing compounds by stitching bound compounds together like a reanimated corpse

fragment-ranking

A method for ranking fragments by how much novel information they give about protein targets in fragment screens. When using the results of fragment screens on many diverse targets, this method has been shown to select a set of functionally diverse fragments that can get information more efficiently from new targets.

fragment_network_merges

Fragment merging using a graph database

graphinity

Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity

hummus

Code associated with generating figures from Richardson & Binter et al, 2022.

immunebuilder

Predict the structure of immune receptor proteins

kasearch

KA-Search: Rapid and exhaustive sequence identity search of known antibodies

learning-from-docked-poses

learning-from-the-ligand

measuring_rank_robustness

Measuring rank robustness in scored protein interaction networks

molecular_rectifier

Given an RDKit molecule that does not sanitise, correct it until it does

molsnapper

oas-canonicalforms

Code to perform clustering of antibody CDRs from predicted structures of sequences from the Observed Antibody Space.

paragraph

Antibody paratope prediction using Graph Neural Networks with minimal feature vectors