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azure-quickstart-templates

Azure Quickstart Templates

azure-templates

bcbio.variation

Toolkit to analyze genomic variation data, built on the GATK with Clojure

beacon

GA4GH Beacon implementation

bedtools2

A powerful toolset for genome arithmetic.

bix

tabix file access with golang using biogo machinery

bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

ensembl-tools

Ensembl tools including the VEP

gatk

GATK Official Release Repository: contains the core MIT-licensed GATK framework, free for all uses

genologics

Python interface to the GenoLogics LIMS server via its REST API.

genologics_sql

Python interface for the Genologics Postgres database.

gluare

A regular expression library for the GopherLua

goluaez

ez embedding lua in go

gopher-lua

GopherLua: VM and compiler for Lua in Go

hts

biogo high throughput sequencing repository

htslib

C library for high-throughput sequencing data formats

igv.js

Embeddable genomic visualization component based on the Integrative Genomics Viewer

irelate

Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang

lita-slack

A Slack adapter for Lita.

loqusdb

A simple observation count database

megaqc

Web application to collect and visualise data across multiple MultiQC runs.

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

multiqc_testdata

Test data for MultiQC. See https://github.com/ewels/MultiQC

nextflow

A DSL for data-driven computational pipelines

patientmatcher

A MatchMaker Exchange server

perl-dbi

picard

A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format.

pyvcf

A Variant Call Format reader for Python.

reference-server

A simple Flask server that implements the Matchmaker Exchange API

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data