cd MedAIR # move to MedAIR directory

python setup.py develop --user #you're on your own for finding and installing dependencies

cd scripts

python build_db.py

python build_word_freq.py

python build_alignment_matrix.py # default embedding bio-wv, use --embedding to change

python build_elastic_search.py #requires elasticsearch to be running in background

cd MedAIR # move to MedAIR directory

cd alignment/retriever

python alignment_ranker.py # currently runs all embeddings, so make sure you perform build_alignment_matrix.py for all embeddings or change the code to only run the desired embedding