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african_a.thaliana

Durvasula and Fulgione et al 2017. "African genomes illuminate the early history and transition to selfing in Arabidopsis thaliana" PNAS 2017, 114(20):5213-5218. URL: http://www.pnas.org/content/114/20/5213.long

bnn

bee detection conv net for a rasp pi on side of a hive

cloveranalysispipeline

dlpipeline

Practical Deep Learning for Genomic Prediction: A Keras based guide to implement deep learning

eucleg

hisat2

Graph-based alignment (Hierarchical Graph FM index)

landscapegenomics

Tutorials for bioinformatics and data analysis related to landscape genomics

liftoff

An accurate GFF3/GTF lift over pipeline

lrscaf

TGS scaffolding

msmc-tools

Tools and Utilities for msmc and msmc2

perceptions

Perceptions of Probability and Numbers

phewas

The PheWAS R package

py-faster-rcnn

Faster R-CNN (Python implementation) -- see https://github.com/ShaoqingRen/faster_rcnn for the official MATLAB version

rmvp

A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study

tensorqtl

Ultrafast QTL mapper based on tensorflow

vcftools

A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.

vott

Visual Object Tagging Tool: An electron app for building end to end Object Detection Models from Images and Videos.