Comments (1)
Hello @twelvesummer ,
These default values are for thresholds to classify a sample as MSI-H (microsatellite instability-high). Although the code provides three distance metrics for comparing microsatellite length distributions, we recommend the DIF metric (default threshold 0.4).
With this recommended metric and default settings, a tumor's (versus its matched normal) MSI score will fall within [0.0, 2.0], and tumors with score >=0.4 are called MSI-H.
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