Comments (7)
skhayrulin
commented on August 11, 2024
Hi @ehsanizadi! Make files locate in the top-level folder (makefile for linux systems and makefile.OSX for mac) you should run make from there. After compiling run Sibernetic with this command ./Release/Sibernetic if you work on linux. Hope this helps, if not let me know.
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alda30
commented on August 11, 2024
I already tried it from top folder, but I get an error,
here is the log:
Building file: src/main.cpp
Invoking: GCC C++ Compiler
g++ -I/usr/include/python2.7 -Iinc -O3 -Wall -c -fmessage-length=0 -MMD -MP -MF"Release/obj/main.d" -MT"Release/obj/main.d" -o "Release/obj/main.o" "src/main.cpp"
Finished building: src/main.cpp
Building file: src/owHelper.cpp
Invoking: GCC C++ Compiler
g++ -I/usr/include/python2.7 -Iinc -O3 -Wall -c -fmessage-length=0 -MMD -MP -MF"Release/obj/owHelper.d" -MT"Release/obj/owHelper.d" -o "Release/obj/owHelper.o" "src/owHelper.cpp"
Finished building: src/owHelper.cpp
Building file: src/owOpenCLSolver.cpp
Invoking: GCC C++ Compiler
g++ -I/usr/include/python2.7 -Iinc -O3 -Wall -c -fmessage-length=0 -MMD -MP -MF"Release/obj/owOpenCLSolver.d" -MT"Release/obj/owOpenCLSolver.d" -o "Release/obj/owOpenCLSolver.o" "src/owOpenCLSolver.cpp"
In file included from inc/owOpenCLSolver.h:48:0,
from src/owOpenCLSolver.cpp:38:
src/owOpenCLSolver.cpp: In member function ‘unsigned int owOpenCLSolver::_runIndexPostPass(owConfigProrerty*)’:
inc/owOpenCLConstant.h:46:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
#define NO_CELL_ID -1
^
src/owOpenCLSolver.cpp:434:39: note: in expansion of macro ‘NO_CELL_ID’
if(gridNextNonEmptyCellBuffer[i] == NO_CELL_ID)
^
Finished building: src/owOpenCLSolver.cpp
Building file: src/owPhysicsFluidSimulator.cpp
Invoking: GCC C++ Compiler
g++ -I/usr/include/python2.7 -Iinc -O3 -Wall -c -fmessage-length=0 -MMD -MP -MF"Release/obj/owPhysicsFluidSimulator.d" -MT"Release/obj/owPhysicsFluidSimulator.d" -o "Release/obj/owPhysicsFluidSimulator.o" "src/owPhysicsFluidSimulator.cpp"
Finished building: src/owPhysicsFluidSimulator.cpp
Building file: src/owWorldSimulation.cpp
Invoking: GCC C++ Compiler
g++ -I/usr/include/python2.7 -Iinc -O3 -Wall -c -fmessage-length=0 -MMD -MP -MF"Release/obj/owWorldSimulation.d" -MT"Release/obj/owWorldSimulation.d" -o "Release/obj/owWorldSimulation.o" "src/owWorldSimulation.cpp"
Finished building: src/owWorldSimulation.cpp
Building file: src/test/owPhysicTest.cpp
Invoking: GCC C++ Compiler
g++ -I/usr/include/python2.7 -Iinc -O3 -Wall -c -fmessage-length=0 -MMD -MP -MF"Release/obj/test/owPhysicTest.d" -MT"Release/obj/test/owPhysicTest.d" -o "Release/obj/test/owPhysicTest.o" "src/test/owPhysicTest.cpp"
Finished building: src/test/owPhysicTest.cpp
Building target: Sibernetic
Invoking: GCC C++ Linker
g++ -o ./Release/Sibernetic ./Release/obj/main.o ./Release/obj/owHelper.o ./Release/obj/owOpenCLSolver.o ./Release/obj/owPhysicsFluidSimulator.o ./Release/obj/owWorldSimulation.o ./Release/obj/test/owPhysicTest.o -lpython2.7 -lGL -lGLU -lOpenCL -lrt -lglut
./Release/obj/owOpenCLSolver.o: In function `owOpenCLSolver::~owOpenCLSolver()':
owOpenCLSolver.cpp:(.text+0x41e8): undefined reference to `clReleaseDevice'
./Release/obj/owOpenCLSolver.o: In function `owOpenCLSolver::initializeOpenCL(owConfigProrerty*)':
owOpenCLSolver.cpp:(.text+0x48d8): undefined reference to `clReleaseDevice'
./Release/obj/owOpenCLSolver.o: In function `std::vector<cl::Device, std::allocator<cl::Device> >::~vector()':
owOpenCLSolver.cpp:(.text._ZNSt6vectorIN2cl6DeviceESaIS1_EED2Ev[_ZNSt6vectorIN2cl6DeviceESaIS1_EED5Ev]+0x30): undefined reference to `clReleaseDevice'
./Release/obj/owOpenCLSolver.o: In function `void std::_Destroy_aux<false>::__destroy<cl::Device*>(cl::Device*, cl::Device*)':
owOpenCLSolver.cpp:(.text._ZNSt12_Destroy_auxILb0EE9__destroyIPN2cl6DeviceEEEvT_S5_[_ZNSt12_Destroy_auxILb0EE9__destroyIPN2cl6DeviceEEEvT_S5_]+0x34): undefined reference to `clReleaseDevice'
./Release/obj/owOpenCLSolver.o: In function `std::vector<cl::Device, std::allocator<cl::Device> >::operator=(std::vector<cl::Device, std::allocator<cl::Device> > const&)':
owOpenCLSolver.cpp:(.text._ZNSt6vectorIN2cl6DeviceESaIS1_EEaSERKS3_[_ZNSt6vectorIN2cl6DeviceESaIS1_EEaSERKS3_]+0x8d): undefined reference to `clRetainDevice'
owOpenCLSolver.cpp:(.text._ZNSt6vectorIN2cl6DeviceESaIS1_EEaSERKS3_[_ZNSt6vectorIN2cl6DeviceESaIS1_EEaSERKS3_]+0xc1): undefined reference to `clReleaseDevice'
owOpenCLSolver.cpp:(.text._ZNSt6vectorIN2cl6DeviceESaIS1_EEaSERKS3_[_ZNSt6vectorIN2cl6DeviceESaIS1_EEaSERKS3_]+0x131): undefined reference to `clRetainDevice'
owOpenCLSolver.cpp:(.text._ZNSt6vectorIN2cl6DeviceESaIS1_EEaSERKS3_[_ZNSt6vectorIN2cl6DeviceESaIS1_EEaSERKS3_]+0x16a): undefined reference to `clReleaseDevice'
owOpenCLSolver.cpp:(.text._ZNSt6vectorIN2cl6DeviceESaIS1_EEaSERKS3_[_ZNSt6vectorIN2cl6DeviceESaIS1_EEaSERKS3_]+0x1b5): undefined reference to `clReleaseDevice'
owOpenCLSolver.cpp:(.text._ZNSt6vectorIN2cl6DeviceESaIS1_EEaSERKS3_[_ZNSt6vectorIN2cl6DeviceESaIS1_EEaSERKS3_]+0x250): undefined reference to `clRetainDevice'
owOpenCLSolver.cpp:(.text._ZNSt6vectorIN2cl6DeviceESaIS1_EEaSERKS3_[_ZNSt6vectorIN2cl6DeviceESaIS1_EEaSERKS3_]+0x2f4): undefined reference to `clRetainDevice'
owOpenCLSolver.cpp:(.text._ZNSt6vectorIN2cl6DeviceESaIS1_EEaSERKS3_[_ZNSt6vectorIN2cl6DeviceESaIS1_EEaSERKS3_]+0x33c): undefined reference to `clReleaseDevice'
./Release/obj/owOpenCLSolver.o: In function `void std::vector<cl::Device, std::allocator<cl::Device> >::_M_assign_aux<_cl_device_id**>(_cl_device_id**, _cl_device_id**, std::forward_iterator_tag)':
owOpenCLSolver.cpp:(.text._ZNSt6vectorIN2cl6DeviceESaIS1_EE13_M_assign_auxIPP13_cl_device_idEEvT_S8_St20forward_iterator_tag[_ZNSt6vectorIN2cl6DeviceESaIS1_EE13_M_assign_auxIPP13_cl_device_idEEvT_S8_St20forward_iterator_tag]+0xb9): undefined reference to `clReleaseDevice'
owOpenCLSolver.cpp:(.text._ZNSt6vectorIN2cl6DeviceESaIS1_EE13_M_assign_auxIPP13_cl_device_idEEvT_S8_St20forward_iterator_tag[_ZNSt6vectorIN2cl6DeviceESaIS1_EE13_M_assign_auxIPP13_cl_device_idEEvT_S8_St20forward_iterator_tag]+0xf4): undefined reference to `clReleaseDevice'
owOpenCLSolver.cpp:(.text._ZNSt6vectorIN2cl6DeviceESaIS1_EE13_M_assign_auxIPP13_cl_device_idEEvT_S8_St20forward_iterator_tag[_ZNSt6vectorIN2cl6DeviceESaIS1_EE13_M_assign_auxIPP13_cl_device_idEEvT_S8_St20forward_iterator_tag]+0x1d4): undefined reference to `clReleaseDevice'
owOpenCLSolver.cpp:(.text._ZNSt6vectorIN2cl6DeviceESaIS1_EE13_M_assign_auxIPP13_cl_device_idEEvT_S8_St20forward_iterator_tag[_ZNSt6vectorIN2cl6DeviceESaIS1_EE13_M_assign_auxIPP13_cl_device_idEEvT_S8_St20forward_iterator_tag]+0x222): undefined reference to `clReleaseDevice'
./Release/obj/owOpenCLSolver.o: In function `int cl::detail::getInfoHelper<cl::detail::GetInfoFunctor0<int (*)(_cl_context*, unsigned int, unsigned long, void*, unsigned long*), _cl_context*>, cl::Device>(cl::detail::GetInfoFunctor0<int (*)(_cl_context*, unsigned int, unsigned long, void*, unsigned long*), _cl_context*>, unsigned int, std::vector<cl::Device, std::allocator<cl::Device> >*, int, cl::Device::cl_type)':
owOpenCLSolver.cpp:(.text._ZN2cl6detail13getInfoHelperINS0_15GetInfoFunctor0IPFiP11_cl_contextjmPvPmES4_EENS_6DeviceEEEiT_jPSt6vectorIT0_SaISD_EEiNSD_7cl_typeE[_ZN2cl6detail13getInfoHelperINS0_15GetInfoFunctor0IPFiP11_cl_contextjmPvPmES4_EENS_6DeviceEEEiT_jPSt6vectorIT0_SaISD_EEiNSD_7cl_typeE]+0xf1): undefined reference to `clRetainDevice'
collect2: error: ld returned 1 exit status
make: *** [Sibernetic] Error 1
Is there any problem with the headers?
I am running Ubuntu 14.04 64bit and with Nvidia GTX Titan VideoCard.
Thanks in advance
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skhayrulin
commented on August 11, 2024
It's wierd. Do you have any opencl drivers installed in your system? If no try to do that http://wiki.tiker.net/OpenCLHowTo. If yes you can explore which version of drivers you have you can use this test example. Also I suppose that it could be useful http://stackoverflow.com/questions/15855759/opencl-1-2-c-wrapper-undefined-reference-to-clreleasedevice. Keep me in touch.
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alda30
commented on August 11, 2024
skhayrulin,
Thanks for the information,
I have installed correctly opencl drivers (I think so because I also run some exacmples with other SPH codes on Github (usingh opencl) and they work fine) and i followed the procedures provided in the link you mentioned.
Afterwards, I downloaded test example , I ran make it went ok but when I run
./print-devices
I get this error:
*** 'clGetPlatformIDs' in 'cl-helper.c' on line 113 failed with error 'invalid/unknown error code'.
Aborted (core dumped)
Sorry I am newbie in this field and may ask weird questions or doing wrong!
Anoyhow, I appreciate your help
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alda30
commented on August 11, 2024
I found out there was aproblem with Nvidia driver
anyhow, now I have application installed.
When I run
./Release/Sibernetic
I get this:
ERROR: Could not open file position.txt
any suggestion?
Another question is that is there any tutorial to learn how to work with the code?
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skhayrulin
commented on August 11, 2024
Thanks for updates! Could you check if position.txt file is really locates in folder configuration/ also do you run Sibernetic from top level folder?
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alda30
commented on August 11, 2024
Ops! I did not run the executable from the top level.
Sorry for that!
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Related Issues (20)
- Steps towards integration of touch sensation HOT 6
- Performance changes in latest development branch HOT 8
- Pressure file format issue HOT 2
- How to expand the liquid particles? HOT 2
- Document the way to access the body position on each step? HOT 1
- Double text in README HOT 4
- Rerun (-l_from) simulation inside openworm container HOT 4
- Pressure buffer file issue HOT 6
- Add more molecular in sibernetic?
- User-defined geometries and muscle models HOT 18
- Asking for simulation HOT 13
- Segmentation fault when pressing 1 or 2 to select demo simulation HOT 5
- Segmentation fault when running Sibernetic built on WSL2 HOT 11
- Header files explicitly links a path to Python.h
- Ubuntu 20.04: free(): double free detected in tchache 2 when replaying simulation HOT 1
- No such file or directory muscles_activity_buffer.txt HOT 1
- Exception: The provided 'key_property' entry does not appear to be a property HOT 4
- Use python-config script for Python libraries in makefile
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