Comments (1)
For individual images #76 should take care of the OMERO rendering metadata transformation both with/without the --bf
flag.
For plates, the logic should be in place when using the OMERO API and there is an RFE for implementing --bf
support (#85).
Except in the latter case, I think the requirement to curl the imageMarshal
URL is now dropped.
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Related Issues (20)
- `zarr export` doesn't support big images HOT 3
- bioformats2raw 0.5.0 upgrade and specification compatibility HOT 1
- labels exported as dtype i8 HOT 1
- export bioformats2raw.layout for Fileset or Images
- Installation instructions
- Replace print statements with logging
- Remove `args` parameter from top-level functions
- ModuleNotFoundError: No module named 'omero_zarr._version' HOT 10
- Produce subresolutions for labeled images HOT 1
- Store provenance information for masks
- Add an "overlap" method for exporting masks HOT 1
- Update docs README HOT 3
- Plate export improvements
- Append type to export value
- Standardize _creator field HOT 3
- Calculate best mask dtype from max label-value HOT 4
- Review export command-line options
- Add support for HCS export with the `--bf` flag
- Improve reporting the "export image" error HOT 1
- Masks with Z or T null should apply across all Z or T indices HOT 1
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