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multistate_local_minima

Illustrate solutions to avoid local minima in multistate capture-recapture models

multistate_occupancy

Code to fit a multistate occupancy model with uncertainty in Jags

multistate_recaprecov

Some R/Jags code to demonstrate an issue with local max in the likelihood when fitting multistate capture-recapture models

my_website

Source code of my website https://oliviergimenez.github.io/.

netdem-workshop-survival-nimble

This repository holds the source materials used for a working group/symposium on capture-recapture models and social networks, and an introduction to capture-recapture models in nimble to estimate demographic parameters.

neuralecology

Code for the paper "Neural hierarchical models of ecological populations"

nimble

A repository to test and learn NIMBLE

nimble-workshop

Material for a workshop on NIMBLE

njtierney.com

Nick Tierney's website

note-information-nombre-loups

Matériel pour l'estimation du nombre de loups en France.

notes-how-to-write-a-lot

occ_balkanlynx

analyses for Balkan lynx paper

occupancy-crash-course

occupancy_in_admb

Illustrate how to fit dynamic occupancy model in ADMB. Benchmarking with Unmarked and JAGS.

occupancy_tmb

Illustrate how to fit dynamic occupancy model in TMB. Benchmarking vs. ADMB, Unmarked and JAGS.

odenimble

oliviergimenez

oliviergimenez.github.io

My site, built with Hugo and Blogdown, and hosted on Github pages. Built and deployed with GitHub Actions from https://github.com/oliviergimenez/my_website repo.

p2cr

Fit principal component capture-recapture model to snow petrel data

phd-in-ecology-network

Produce the French academic network in ecology using data from these.fr

poaching_occupancy

Inferring poaching with multispecies dynamic occupancy models and hidden Markov models

polar_bears_litter_size_environment

pop-matrix-collision-lynx

Effet des collisions sur la viabilité du lynx

popdyn-workshop

Website of workshop Quantitative Methods for Population Dynamics in R

portaldata

Official Repo of the Portal Project Data

postereuring2021

power_analysis_interaction_networks

This repository contains code to compute the correlation between an estimated social network and the true, unobserved social network for networks constructed from interaction rates.

predator_prey_icm

Integrated population models for interacting species

presidentielle22

Analyse des résultats de la présidentielle 2022 par bureau de vote à Montpelier

prezdloccupancy

Slides of a talk on deep learning, false negatives/positives and predator-prey interactions with R.