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arvados

An open source platform for managing and analyzing biomedical big data

arvados_siriusadapter_ms

OpenMS SiriusAdapter

bcb430

bioconda-recipes

Conda recipes for the bioconda channel.

buildresources

Resources for building GKN and related plugins with e.g. buckminster

cacao_biomarkeridentification

de.openms.knime

Nodes etc. related to OpenMS

dialignr

This is a R package for alignment of DIA mass-spec data

diametalyzer_additional_code

Additional code used for the analysis of MTBLS1108 (DIAMetAlyzer)

docker_files

dockerfiles

dockerfiles

dockerfiles-1

This repository holds Dockerfiles for creating docker images for several OpenMS configurations based on different base images.

example_feature_mapping_pyopenms

Example for feature mapping in pyopenms

hello-worlds

Yet another collection of Hello World programs

metaboassaylibtomspconversion

Conversion of OpenMS AssayGeneratorMetabo Assay Library to MSP

metaboassaylibtoskylinetransitionlistconversion

Conversion of OpenMS AssayGeneratorMetabo Assay Library to Skyline Transitions List

mztab

mzTab Reporting MS-based Proteomics and Metabolomics Results

openms

The codebase of the OpenMS project

openms_ph_script

openswath

pyopenms-extra

pyOpenMS extra utilities, scripts and examples

pyprophet

PyProphet: Semi-supervised learning and scoring of OpenSWATH results.

scripts

spectrast

swathqc

thirdparty

External dependencies (e.g. search engine binaries) packaged in installers

tutorials

Tutorials as used in the user meetings. (Please assign a git tag for the revision used for the UM)

vorkurs-1

vorkurs_merging

working repository to learn how to solve merge conflicts