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3d_cyclegan

Testing functions for making 3D CycleGAN from CT scans work for numpy MRI

3d_renderer

Panda3D renders voxels for numpy array

beginner_projects

My various early playground-type projects

bih_ishaque_lab_internship

"Deconvolution of Cell Type Ancestry using Partially Methylated Domains": My project from my internship at the Berlin Institute of Health within Charité (28.07.19-29.09.19) under group leader Dr. Naveed Ishaque.

blender_add-ons

Programs that automate specific animation processes for vectors that I import and want to display in a certain way.

bprna

bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure

buildaspectrometer

Analytical Sciences Module: After designing a spectrometer with CAD and testing red and blue dye samples, our Molecular Bioengineering MEng course wrote a program to analyze the data.

capstone-location-project

IBM Data Science on Coursera direct a project

cellsimulation

Cell and cancer cell evolving on a board, assignment 3 Molecular Bioengineering year 2

chrome-remote-desktop-linux

Patches for using Chrome Remote Desktop's remote access on Ubuntu 21.10 with the same session.

cont_int_tutorial

Tutorial using Circle CI https://realpython.com/python-continuous-integration/?fbclid=IwAR0fOAlchMnFQdKipPc3eo6xj9nDPqVu09hB4qmoP7gdQrCR_dLWZ9SiUQ0

crn-engine

Tools for programming chemical reaction networks (CRN), DNA strand-displacement circuits (DSD) and genetically engineered circuits (GEC).

dna_transcriber

Real easy C++ DNA transcription program. Put in DNA sequence and get the reverse.

evoscaper

imperial_igem2020

Misc leftovers from Imperial College iGEM 2020

kmeans-lab

knee-deep-in-mri.github.io

Knee Deep github.io presentation

kneedeepml

learning-tensorflow

Simple Tensorflow tutorials for learning by example

masters_thesis

optimising_gene_circuits

plotly-voxel-renderer

Generate a 3D plotly voxel graph from a 3D numpy array (created for MRI deep learning visualisations). Embed the plot into your github io!

proteindatabase-cpp

A database project for Molecular Bioengineering, Programming Y2.

pyvis

Python package for creating and visualizing interactive network graphs.

reversi-cpp

Reversi Game from Programming Y2, Molecular Bioengineering.

srna_design

synbio_2d-cellular-automata

Local tools for processing DNA etc.

synbio_morpher

toy_snp_caller

NVIDIA Workshop: Mike Vella's example of deep learning for bioinformatics SNP classifier with me and Julius Upmeier's pytorch implementation.

tutorial_pggan_brainmri