Comments (5)
@gowthamrao actually, my approach is making 'conversion query' from v5 to v6.
We're working on it, and I plan to release the code (it would not be perfect, we'll focus on adding columns, convert death to condition, and update datetime)
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Thank you @chandryou
Would you like to discuss the conversion logic?
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Hi @chandryou -- just curious how this process is going. We're beginning to test a branch of Achilles that supports CDM v6, and would love to try it against Synpuf.
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We upgraded the CDM version by using very simple code (just adding columns and moving death record from death table to condition table). We'll upload the code to the github soon and let you know, @alondhe
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We're working in here : https://github.com/Jimyung6642/CDM_update_to_v6
It requires further cleansing.
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Related Issues (20)
- Column mismatch in create_CDMv5_tables.sql and load_CDMv5_vocabulary.sql HOT 1
- Error on Step 5 of Python ETL process HOT 2
- Person ID as integer, CMS's synthetic data has string IDs HOT 1
- CMS RIF to OMOP ETL? HOT 2
- CMS ACO CCLF --> OMOP V5 HOT 1
- md5 sums don't match files - https://github.com/OHDSI/ETL-CMS/blob/master/python_etl/README.md HOT 4
- Issue while running python code to get the claims data HOT 6
- Memory issue of steps 5 in ETL Script HOT 9
- drug_era, observation_period, cost column mismatch HOT 5
- CDMv5.2 is not accessible HOT 2
- KeyError: 'Place of Service' HOT 3
- location_id is null for all care_site records HOT 3
- missing 'DE1_0_2010_Beneficiary_Summary_File_Sample_1.zip' HOT 5
- FTP server down? HOT 1
- Downloading final data HOT 1
- Incorrect URL to one source Synpuf file HOT 5
- Updating to newer CDM versions + upload R script available HOT 1
- key error '40213148'
- Convert CMS SynPUF to OMOP v5.4
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