Comments (6)
Hi Ratan,
You did not type the python command at the beginning of your command line. Plus you did not specify a valid output directory. You should replace "path/to/output/directory" with a pathname of where to store the data. It is also strange you are currently working from the Python27 directory -- presumably your installation directory for python, instead of a folder where all of the ETL-CMS files are stored.
Sincerely,
Christophe
from etl-cms.
Are you just looking to get a copy of the data? You don't need to generate it yourself. In fact we just updated to V5.2.
This doesn't solve the Python issue, but you don't need to solve it if you just want the data.
Let me know and then we can work on getting it to you. Since we just finished generating it we don't have it formally released somewhere yet.
from etl-cms.
Hi Erica,
I only need a copy of CMS synthetic claims data. I was able to manually download the claims data DE_1 to DE_20 from CMS site.
Since we have to convert one of the datasets to CDM and I am new to ODHSI so wanted to understand the full workflow of it by executing all the steps of the different dataset. I will be able to use the data which I downloaded manually but still wanted to understand why that particular code did not work?.
I am also having problems with other steps which I will be posting after trying all alternatives from my side.
Thank you for the updates on V5.2. Any particular date on which the V5.2 is getting released?
Thanks,
Ratan
from etl-cms.
Hi Chris,
sorry for the confusion, I just used the path as an example however I missed the python command at the beginning of command line.
I have used the below path to generate output files but still getting the same issue. please suggest a way forward.
Thanks,
Ratan
from etl-cms.
Look inside the python file and see if it looks like html. If so, you did not properly retrieve it from github -- make sure to get the raw version of the file.
Christophe
from etl-cms.
Hi Christophe,
done. I was able to execute and download the data from my side now. Thank you.
I was having some problem because of JDK version.
Thanks,
Ratan
from etl-cms.
Related Issues (20)
- Column mismatch in create_CDMv5_tables.sql and load_CDMv5_vocabulary.sql HOT 1
- Error on Step 5 of Python ETL process HOT 2
- Person ID as integer, CMS's synthetic data has string IDs HOT 1
- CMS RIF to OMOP ETL? HOT 2
- CMS ACO CCLF --> OMOP V5 HOT 1
- md5 sums don't match files - https://github.com/OHDSI/ETL-CMS/blob/master/python_etl/README.md HOT 4
- Memory issue of steps 5 in ETL Script HOT 9
- drug_era, observation_period, cost column mismatch HOT 5
- Update ETL logic to support CDM 6.X HOT 5
- CDMv5.2 is not accessible HOT 2
- KeyError: 'Place of Service' HOT 3
- location_id is null for all care_site records HOT 3
- missing 'DE1_0_2010_Beneficiary_Summary_File_Sample_1.zip' HOT 5
- FTP server down? HOT 1
- Downloading final data HOT 1
- Incorrect URL to one source Synpuf file HOT 5
- Updating to newer CDM versions + upload R script available HOT 1
- key error '40213148'
- Convert CMS SynPUF to OMOP v5.4
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