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cgreich avatar cgreich commented on August 31, 2024 1

No, you need to have your UMLS license and credentials.
The machine needs access to the internet. Without any proxy gymnastics. Does it?

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cgreich avatar cgreich commented on August 31, 2024

Will fix. Thanks, @vickysam.

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topspinj avatar topspinj commented on August 31, 2024

Athena instructions require you to pass in username and password of your UMLS account:

java -Dumls-user=xxx -Dumls-password=xxx -jar cpt4.jar 5

Can you run it without?

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topspinj avatar topspinj commented on August 31, 2024

I get the following error when I run java -jar cpt4.jar 5:

Error: Unable to initialize main class org.odhsi.utils.cpt.Application
Caused by: java.lang.NoClassDefFoundError: javax/xml/ws/WebServiceException

using Java v11. I'm not very familiar with Java, do you know what the issue might be?

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topspinj avatar topspinj commented on August 31, 2024

Am still seeing that error (above) when I pass in my UMLS credentials.

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topspinj avatar topspinj commented on August 31, 2024

Update: The jar file isn't compatible with Java 11. After downgrading Java, I no longer get the error above.

I think it would be useful to update the docs:

  1. specify which Java version to use (version 10 or lower)
  2. add UMLS credentials to jar command java -Dumls-user=xxx -Dumls-password=xxx -jar cpt4.jar <version = 4 or 5> (or just use bash cpt.sh)

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