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algorithmstudy

aprile

APRILE: A python library for exploring Adverse Polypharmacy Reaction using Intelligent Learner and Explainer

aprile-casestudies

aprile-exp

This is the repository for reproducing results in "APRILE: Exploring the Molecular Mechanisms of Drug Side Effects with Explainable Graph Neural Networks".

aprile-pred

PoSe-Model: A simplified TIP model for drug side effect prediction (Under development...)

awesome-knowledge-graph

A collection of research on knowledge graphs

awesome-network-embedding

A curated list of network embedding techniques.

bio-chem-graph-representation-learning

biofilm

analysing and visualising biofilm simulation results from GEMs with unsupervised methods

butterfly-voice-changing-bowtie

Butterfly Voice Changing Bowtie (BVCB), simple Sound regulator/simulator（PureData Implementation）

cluster_gcn

cse282-nutriomics-project

Solving combinatorial selection of nutrients to treat patients with low abundance microbes

deca

decagon

Graph convolutional neural network for multirelational link prediction

deeppurpose

A Drug-Target Interaction Prediction Toolkit with State-of-the-Art Deep Learning Methods and its Applications in Drug Repurposing and Virtual Screening

denovopipeline

Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.

drug-repurposing-leishmaniasis

This is the sub working repository for "Compound Screening with Deep Learning for NeglectedDiseases: Leishmaniasis." (MLCB, 2021)

drug-repurposing-leishmaniasis-1

drugdiscovery

An explainable inductive learning model on gene regulatory and toxicogenomic knowledge graph (under development...)

gcnii

PyTorch implementation of "Simple and Deep Graph Convolutional Networks"

gnn-model-explainer

gnn explainer

google-research

Google Research

graph_transformer_networks

Graph Transformer Networks (Authors' PyTorch implementation for the NeurIPS 19 paper)

gripnet

GripNet: Graph Information Propagation on Supergraph for Heterogeneous Graphs (PatternRecognit, 2023)

img2latex-mathpix

An image to LaTeX tool by MathpixOCR API and JavaFX

java-practice

ladybug

An efficient web-based Code Similarity Detection tool with report generator

machine-learning

Notes and implementations for fundamental machine learning

memo

Constraint-based metabolic modelling with sparse IPOPT

metapath2vec