Comments (6)
I think we may want to look at the script we give people in 'Getting Started..' so that it works from fresh R install.
Or at least a script that checks/updates/installs all the Bioconductor packages.
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This is something I've been struggling with on the Github repository. When you install a package from CRAN, it will load all of the dependencies from Bioconductr. There's a way to get R to look in Bioconductr if you'repeated installing from Github. I should add that to the Github README
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I'm not sure why htmlwidgets didn't load for you. It is a CRAN package. But then, I'm not sure if install_github loads dependencies. I'll have to check the documentation and adjust the script accordingly.
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I'm almost able to get HydeNet
to load on a clean install. When I do have problems, it seems to be with RBGL
, so I have to explicitly install that package for some reason. Unfortunately, to remove our dependency on RBGL
requires removing our dependency on gRbase
, which is the package that builds the dag from which we pull the node names and parents. And gRbase
is the only package I can find that offers that formula syntax. So if we abandon gRbase
, we have to reenvision how me define the models. I have to admit, I'm not crazy about that idea.
I did move gRbase
from the Depends: to the Imports: field. This means that the gRbase
isn't loaded when HydeNet
is loaded. That seems to help a little.
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And I assume you won't be crazy about the idea of building a mirror package within Python (just kidding - the idea, though, came out of the fact that Python has an integrated MCMC sampler built right into the platform so no translating formulas and syntax across packages.
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Actually, I'm not completely opposed to it. But I wouldn't want to tackle that on the time frame we're discussing for this package :)
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Related Issues (20)
- Change JAGS parameter names to R parameter names HOT 2
- Change HydePosterior to HydeSim
- Update documentation in `setNode`
- setNode dbern bug HOT 4
- Error when data is tibble HOT 3
- Inaccurate HydeSim() predictions with discrete nodes
- Truncated normal distribution HOT 1
- `setNode` doesn't have a `nodeData` argument.
- `bindPosterior` should retain an index for chain number HOT 4
- Store network images in vignettes as PNGs HOT 5
- Formula checking error HOT 4
- [!] logit() and the VGAM package HOT 4
- Stan Integration
- ArgumentCheck error in setNode() HOT 1
- Changing graph layout
- Adding observed nodes to compileDecisionModel() HOT 3
- Changes in upcoming v0.8 release of `DiagrammeR` package will require changes in `plot.HydeNetwork` HOT 3
- Relaxing some decision/utility node constraints HOT 6
- policyMatrixValues() returns null HOT 1
- Categorical interactions are not handled correctly
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