Comments (4)
Hey Ryo, what version of psichomics do you have installed? You can check with packageVersion("psichomics")
. Please try to update to the latest version.
You can also manually install org.Hs.eg.db
via BiocManager::install("org.Hs.eg.db")
, although this package is no longer a dependency in the newest version of psichomics.
Please let me know if this solves your issues or not. Cheers!
from psichomics.
Thank you very much for your quick response. The version is 1.17.0. (installed on 2021/05/21).
packageVersion("psichomics")
[1] β1.17.0β
Manual installation of org.Hs.eg.db
could not improve the problem...
Ryo
from psichomics.
Okay, so there is a 1.18.0 version of psichomics. Could you try to update to this version using Bioconductor?
BiocManager::install("psichomics")
If that doesn't install the 1.18.0 version, please try to install the latest version directly from GitHub with:
install.packages("remotes"); remotes::install_github("nuno_agostinho/psichomics", ref="master")
from psichomics.
I have installed and started psichomics version 1.17.0, although a version 1.18.0 cannot be installed in my Windows environment.
I will proceed my analysis with 1.17.0. Thank you very much for creating such a great program and for your kind help.
Ryo
from psichomics.
Related Issues (20)
- Copy-edit exported function documentation
- Use ellipsis package?
- Use `options()` to set package-wide options
- Import output from Whippet into Psichomics HOT 2
- 'parseMatsAnnotation' requires "AFE" and "ALE" txt, which are not produced by rmats HOT 2
- the rownames of PSI generated using the custom annotation doesn't contain gene names HOT 3
- Quick multiple ANOVA testing using a matrix as input
- NULL genes when using custom annotations HOT 7
- No significant event HOT 1
- Translation among annotations HOT 5
- confused about results HOT 6
- Visual interface not starting with new R v.4.1.1 HOT 2
- importing rMATS dPSI HOT 1
- psichomics() Error in xj[i] : invalid subscript type 'list' HOT 3
- Warning: Correlation analyses already performed [in "Correlation analyses"] HOT 1
- Suggestions for QC? HOT 2
- I couldn't download data from the TCGA database. How do I need to fix itοΌ HOT 2
- Samples Column in Splicing Results HOT 2
- unable to download files using loadFirebrowseData HOT 1
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