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30daysofcharts2023

Charts made for 30 Days of Charts 2023 Challenge

decontam

Simple statistical identification and removal of contaminants in marker-gene and metagenomics data

gnomix

A fast, scalable, and accurate local ancestry method, with updated requirements.txt file

hello-world

Github Tutorial Repos

human_virome_analysis

mad

Microbial Aerotolerance Database

metaboliteassoc

Causal Associations from Metabolite Data

metagenomicstools

Tools for metagenomics analysis

microbiome_helper

An assortment of scripts to help process and automate various microbiome and metagenomic bioinformatic tools.

mutacheck

Testing this pipeline

phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

snakemake-wrappers

This is the development home of the Snakemake wrapper repository, see

tada

TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region

tagore2

The script presents a simple way to visualize features on human and other species chromosome ideograms

tidytuesday

Collection of visualizations and data analyses from rfordatascience tidy tuesday

vigen

viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data

virtus

A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.