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3d_print_designs

analysis-tools

Code for reading data saved by the Open Ephys GUI

buzcode

Code for internal lab sharing - polishing has started but is by no means complete

cellexplorer

CellExplorer is a graphical user interface (GUI) and standardized pipeline for exploring and characterizing single cells acquired with extracellular electrodes

cnmf_e

Constrained Nonnegative Matrix Factorization for microEndoscopic data

deeplabcut

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals

deepsqueak

DeepSqueak: A Deep Learning Based System for Quantification of Ultrasonic Vocalizations

eraser

Consolidation Blocking + Miniscoping Code

fearreinstatement

gpsfun

My attempt to have fun with GPX data.

gpxpy

gpx-py is a python GPX parser. GPX (GPS eXchange Format) is an XML based file format for GPS tracks.

imagealt

Scripts for analyzing endoscope data, focusing on spatial alternation sessions.

imagecamp

In vivo GCamp behavioral and data processing functions/scripts in MATLAB

imagetreadmill

Imaging experiments using treadmill running

minian

miniscope analysis pipeline with interactive visualizations

miniscope-daq-qt-software

Software for streaming and controlling neural and behavioral data from freely behaving animals

neuropy

npy-matlab

Experimental code to read/write NumPy .NPY files in MATLAB

opto

uLED Opto project code

osc1lite

optical stimulation controller - lite edition (12 channels w/ COTS DACs)

place-stimulation

Code to provide place specific optogenetic stimulation on the linear track

planets

pomidaq

Portable Miniscope Data Acquisition

scopix

Eichenbaumers working on the Schniterscope project in matlab

sleep_loss_hippocampal_replay

NK fork of sd_paper repository

spyking-circus

Fast and scalable spike sorting in python

test

test depository

tracefc

Trace Conditioning Imaging + Ephys related code