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Nicholas Johnson's Projects

data690 icon data690

Work for a Python/Data Science review class

genoml2 icon genoml2

GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data

genotools icon genotools

A suite of tools for processing genotype data. Includes calling genotypes from .idat to plink (ped), sample/case-control variant QC steps, ancestry estimation. UNDER DEVELOPMENT

gffutils icon gffutils

GFF and GTF file manipulation and interconversion

icn3d icon icn3d

WebGL-based protein structure viewer

krakenuniq icon krakenuniq

🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results

lcdb-wf icon lcdb-wf

Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis

maestro icon maestro

Single-cell Transcriptome and Regulome Analysis Pipeline

repo-2017 icon repo-2017

Python codes in Machine Learning, NLP, Deep Learning and Reinforcement Learning

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