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Name: Derek Bickhart
Type: User
Name: Derek Bickhart
Type: User
An annotation program I've written that can compare several data file types to UCSC data tracks.
A collection of Java classes and abstractions to assist with processing bed files. Translates several algorithms from Aaron Quinlan's Bedtools to Java
BuffaloAssemblyScripts
Scripts and documentation related to the assembly of ARS-UCD1.2
Translator for CDCB codes from csv files
A GUI tool to consolidate CDCB files
Miscellaneous collection of Python and R scripts for processing Iso-Seq data
A program that estimates depth of coverage over variant loci (BAM or VCF form)
A java utility to efficiently merge/order Fasta files
Converts several cufflinks output files into easily readable excel tables using Apache's POI library
Complementary Sequence Variant Detection
A java version of my sequence analysis automation pipeline
A catchall collection of Java classes and utilities that help to manage specialized file types
Scripts and tools to assist with the genome assembly of plant forage species
A program that efficiently identifies masked or gap regions in assemblies
A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly
A pipeline and group of scripts for managing GridION data
Files used in a workshop describing how to set up virtual environments on the WUR HPC cluster
Java implementation of Mean Shift algorithm for RD CNV calling
Java Bindings (JNI) for bwa
A Java port of the MrsFAST-Ultra algorithm for rapid mapping location discovery
A listing of the commands, protocols and other notes that I take on a daily basis
Parsing utility for larger, multi-sample VCF files
Method to normalize genomic window values by locally weighted linear regression of GC% values
Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)
Finds MEI from divet files
A genomic k-mer counter (and sequence utility) with nice features.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.