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awesome-nanopore

A curated list of awesome nanopore analysis tools.

bio-playground

miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.

candida_auris_b11220_genome-wide_annotation_database

This repository contains the Annotation Database for Candida auris B11220 and the steps to build the database locally.

droseu_pipeline

Bioinformatics pipeline for the generation and analysis of the DrosEU data of 2014.

human-genome_assembly_project

icarust

A fully featured MinKNOW simulator for testing read until experiments.

metagenomicsbenchmark

metasutra

This pipeline takes the raw metagenomic WGS reads as an input, assemble them, separate the contigs in MAGs, taxonomically classify the MAGs and quantify the ARGs in the MAGs. The pipeline is built using R Shiny and people can run end to end analysis by doing few clicks on the screen.

mitochondrial_benchmarking_study

This repository contains the codes and additional data utilized in the benchmark study of short read based mitochondrial assemblers for human datasets

mtoolbox

A bioinformatics pipeline to analyze mtDNA from NGS data

old_markravinet.github.io

Github website

project

python

All Algorithms implemented in Python

startapp

The START App: R Shiny Transcriptome Analysis Resource Tool

tar-scrna-seq

scRNA-seq analysis beyond gene annotations using transcriptionally active regions (TARs) generated from sequence alignment data

tidal

Transposon Insertion and Depletion AnaLyzer

training-collection

Collection of bioinformatics training materials