Comments (1)
Closed through #8
from dmriprep.
Related Issues (20)
- Use `get_bval` and `get_bvec` to get bval/bvec files
- Cannot run dMRIPrep. Missing dependencies:antsAI (Interface: AI)
- dMRIprep 0.5.0: No folder output dir of dwi created HOT 5
- Archive this project? HOT 1
- add another postprocessing step to HBN study data -- rename AP/PA fmaps
- nibabel get_data vs get_fdata HOT 5
- ENH: Two pipelines HOT 4
- Cloudknot Freesurfer
- ENH: Optional preprocessing steps for denoising, unringing and upsampling HOT 3
- For `data.Study` object, maybe the `s3_prefix` input should default to None?
- regenerate neurodocker docker file with min version of Freesurfer
- Longitudinal pipeline
- make a CLI that would run docker with the dependencies in it HOT 1
- End-to-end testing
- Add a docker entry point
- Handle multiple runs in the same session
- Handle cases where field-map is collected with a different resolution than the dwi HOT 1
- Two phase encode directions, but no field maps
- Replace Freesurfer registration with DIPY-based registration
- Doesn't work with no field maps
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