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Hi there,

I am a PhD student in computational bayesian medical genomics. At the moment I am working on high performance large scale model implementations for the prediction of medical phenotypes from genomic data.

Nick Noel Machnik's Projects

avablast icon avablast

Small tool that makes the submission of all-vs-all BLAST jobs more convenient .

bedvec icon bedvec

Testing ground for parallel processing of genotype data stored in PLINK .bed format

codon-degeneracy icon codon-degeneracy

Routines for the extraction of degenerate sites and calculation of numbers of neutral substitutions from sequences and alignments.

coffeebuddybot icon coffeebuddybot

An email bot that sends notifications to members of a social group about their coffee buddy of the week.

cpp-hmc icon cpp-hmc

Testing ground for a hamiltonian monte carlo implementation in c++.

expected-levenshtein icon expected-levenshtein

Empirically determined approximate values for levenshtein distances between random strings.

fasta-rs icon fasta-rs

A rust lib for parsing and manipulating files in fasta format.

fastatools icon fastatools

Command line tools for indexing, parsing and manipulating FASTA files.

hmc-first-steps icon hmc-first-steps

Implementations of the Hamiltonian Monte Carlo scheme for educational purposes

hydra-docker icon hydra-docker

Dockerfile for creating image containing compiled Hydra

keep-in-touch icon keep-in-touch

A command line organizer that helps you remember to call your friends.

nuts icon nuts

python version of the No-U-Turn Sampler (NUTS) from Hoffman & Gelman, 2011

py-gen-bed icon py-gen-bed

Generate random genotype matrices in PLINK .bed format in python

rs-hmc icon rs-hmc

Hamiltonian Monte Carlo and No-U-Turn Sampler implementations in Rust.

sigmoidal-growth icon sigmoidal-growth

A simple python library for finding the maximal slope in approximately sigmoidal growth curves.

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