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ngs-fzb's Projects

binosnp icon binosnp

:mag: :pill: Detection of low-frequency SNPs in next-generation sequencing data of Mycobacterium tuberculosis complex strains

haemoseq icon haemoseq

A collection of bash starter scripts and curated reference databases for the whole genome sequencing based analysis of human-related Haemophilus isolates.

mtbseq_source icon mtbseq_source

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

ntmtools icon ntmtools

This repository contains scripts and manuals used in the paper "Delineating Mycobacterium abscessus population structure and transmission employing high-resolution core genome multilocus sequence typing" (Diricks et al. 2022). Questions? Ask [email protected]

sarscov2seq icon sarscov2seq

Pipeline for the analysis of SARS-CoV-2 tiled amplicon sequencing data

smaltophilia_phylo icon smaltophilia_phylo

Scripts used in the The phylogenetic landscape and nosocomial spread of the multidrug-resistant opportunist Stenotrophomonas maltophilia paper

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