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adam

A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

api-client-python

Provides a simple genome browser that pulls data from the API in Python.

avocado

A Variant Caller, Distributed. Apache 2 licensed.

bdg-utils

General (non-omics) code used across BDG products. Apache 2 licensed.

cclabel

Fast connected-component labelling in Swift

clonehd

High-definition reconstruction of clonal composition from next-generation sequencing data

codetimer

Very simple utility for recording the performance of blocks of code in C++

decision_making

deeplearning4j

Deep Learning for Java, Scala & Clojure on Hadoop, Spark & Flink

dnc

A TensorFlow implementation of the Differentiable Neural Computer.

gpflow

Gaussian processes in TensorFlow

hadvisor

hashtableperf

Tests hash table performance across 3 different languages: C++, Java, and Python

hprof-parser

An extensible parser for hprof heap dump files produced by various JVMs

hprof_python

An (unfinished) attempt to write data in the .hprof format from Python

java-progressbar

ProgressBar

java-time-zone-list

Provides a list of time zones in Java, suitable for displaying in user interfaces. This is a smaller set of time zones than those installed with Java, and is almost identical to the list of time zones provided with Windows.

jvmemory

Low-overhead analyzer for JVM heap dumps (unfinished)

l1_dim_pruner

Prunes the specified proportion of parameters with the lowest L1-norm in a specific dimension of a tensor.

libsbolj

Java Library for Synthetic Biology Open Language (SBOL)

lichee

mlgen

nano_aim

A fork of nanoGPT that adds experiment tracking with Aim

nanogpt_l1_dim_pruner

Benchmark for l1_dim_pruner using nanoGPT

nfergu.github.io

parquet-test

Some basic tests for Parquet (http://parquet.io)

phylowgs

Application for inferring subclonal composition and evolution from whole-genome sequencing data.

popstrat

Population Stratification Analysis on Genomics Data Using Deep Learning

referrers

relative-image-url

A simple test of using relative URL in .MD files