Comments (2)
I would just add filtling
to begin, and we can add the other if you prefer it in later releases
from taxprofiler.
Sounds great!
from taxprofiler.
Related Issues (20)
- Decontamination: add hostile for host removal HOT 5
- https://github.com/nf-core/taxprofiler/pull/318
- Enhance Profiler ganon by adding combineProfilesWithDatabase
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- KMCP profile mode forced for all databases HOT 1
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- Update KrakenUniq to 1.0.4 due to bug causing misreading if input files
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- process `MEGAN_RMA2INFO` JavaFX detected no fonts error HOT 1
- Taxpasta parameters produce an error exit status of 2 which asks for a taxonomy even though kraken2 and centrifuge have worked. HOT 1
- Taxpasta parameters produce an error exit status of 2 which asks for a taxonomy even though kraken2 and centrifuge have worked. HOT 1
- process `VISUALIZATION_KRONA` mis-combined channel by wrong index HOT 3
- `KRONA_KTIMPORTTEXT` input file name collision if same 'db_name' is assigned to kraken2 and bracken HOT 5
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