Comments (4)
You can update samtools
to lastest version.
from nextpolish.
Iām delighted to receive your reply, thank you! In fact, I checked and found that the version of samtools in the conda environment where NextPolish is installed is 1.3.1, which does not have the -@ parameter. However, version 1.11 of samtools does have the -@ parameter. Are you suggesting that I need to upgrade the samtools in the conda environment to version 1.11?
from nextpolish.
Yes
from nextpolish.
Oki! Thank you very much~
from nextpolish.
Related Issues (20)
- Installation failure with multiple definition of 'rle_auxtab' HOT 3
- db_split failed: HOT 4
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- make[2]: *** [Makefile:30: bwa] Error 1 éčÆÆ HOT 1
- slurmstepd: error: JOB CANCELLED DUE TO TIME LIMIT HOT 1
- run fails with long read only in conda env HOT 5
- SLURM out of memory and time... HOT 1
- [main_samview] fail to read the header from "-" HOT 1
- zlib.h not found error HOT 1
- polish_genome failed HOT 1
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- An error message was encountered while running 00.lgs_polish/04.polish.ref.sh.work/polish_genome01
- How does NextPolish handle short-reads mapping to multiple parts of the genome? HOT 1
- The telemore sequences were removed after Nextpolish HOT 1
- After I run nextPolish run.cfg, the NextPolish vanished and generate a copy HOT 2
- After the gap filling for scaffolds, using NextPolish. HOT 1
- NextPolish fails with Short and Long Reads HOT 1
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