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Sleiman Bassim's Projects

bcftools icon bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

blat icon blat

Alignment transcriptome to genome

bwa icon bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

caret icon caret

caret (Classification And Regression Training) R package that contains misc functions for training and plotting classification and regression models

d3 icon d3

A JavaScript visualization library for HTML and SVG.

dotfiles icon dotfiles

dotfiles for my elementary OS workbench

jupyterlab icon jupyterlab

JupyterLab computational environment. This is a very early preview, and is not suitable for general usage yet.

krona icon krona

Interactively explore metagenomes and more from a web browser.

ntseq icon ntseq

JavaScript (node + browser) bioinformatics library for nucleotide sequence manipulation and analysis.

picard icon picard

A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format.

pipelines icon pipelines

Machine learning and bioinformatic workflows for gene discovery.

rstats icon rstats

R scripts for human and marine data analysis

seqtk icon seqtk

Toolkit for processing sequences in FASTA/Q formats

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