ncihtan Goto Github PK
Name: NCI Human Tumor Atlas Network (HTAN)
Type: Organization
Name: NCI Human Tumor Atlas Network (HTAN)
Type: Organization
Set up a scheduled Cloud Run job to update HTAN metadata tables in BigQuery daily.
Scripts and notebooks on collating, exposing and harmonising channel metadata
Schema.org Data Models for HTAN
Google Cloud Run job to validate unreleased data files
Project configurations for the Data Curator App
Script and action to monitor dbGaP authorized requestors
Analytics and Integration Scripts for Digital Slide Integration with Synapse for the Human Tumor Atlas Network (HTAN)
Google Cloud Function code to index files in GC bucket by creating filehandles on Synapse, triggered by changes to bucket.
Command line tool for generating HTAN dashboard.
Command line tool for generating simulated HTAN metadata for the HTAN Data Portal.
A NextFlow pipeline to run image rendering process to generate resources for the HTAN Portal.
HTAN Data Ingest Shiny App
A draft of the HTAN dataset ingress workflow - to share with tester teams and early adopters.
Natural language descriptions of HTAN metadata
The HTAN Data Portal
An example configuration based off 10x visium tutorial
HTAN - The Missing Manual
A tool to de-identify tiff-based file formats for the HTAN DCC
Google Cloud Function to update BigQuery ID Provenance table
Matching manifest metadata to those in image headers
Multiple-choice microscopy pipeline
Nextflow pipeline to transfer data from Synapse to a CDS AWS bucket
nf-imagecleaner is a Nextflow pipeline that prepares images for upload to HTAN by removing sensitive data
A NextFlow workflow to prepare Vectra mIF qptiff files for the HTAN DCC
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