Add IRI mapper for SKOS Core Vocabulary to prevent missing import errors about owlapi_wrapper HOT 4 CLOSED

embedding file should reduce overall complexity and improve resiliency against external resource connectivity issues.

from owlapi_wrapper.

@alexskr - any opinion on where our copy of skos.rdf should live?

from owlapi_wrapper.

do you know if there a way to specify local file system path instead of a web address? If thats possible then embedding it with owlapi_wrapper would be my first choice.
Or maybe we can host skos core in BioPortal?

Alternatively we can create a purl for it and host file on ontoportal or www.bioontology.org site.

from owlapi_wrapper.

The example code provided by the OWL API shows that you can use a local file system path. I tested it and it seems to work - at least in a simple unit test scenario:

@Test
public void testSimpleIRIMapper() throws Exception {
  IRI skosCoreIRI = IRI.create("http://www.w3.org/2004/02/skos/core");
  IRI skosCoreDocumentIRI = IRI.create("file:/Users/vendetti/Downloads/skos.rdf");
  SimpleIRIMapper mapper = new SimpleIRIMapper(skosCoreIRI, skosCoreDocumentIRI);

  OWLOntologyManager manager = OWLManager.createOWLOntologyManager();
  manager.getIRIMappers().add(mapper);

  File broFile = new File("src/test/resources/BRO_v3.2.owl");
  FileDocumentSource fileDocumentSource = new FileDocumentSource(broFile);
  OWLOntology ontology = manager.loadOntologyFromOntologyDocument(fileDocumentSource);
  assertNotNull(ontology);
}

So I take it that means you'd prefer to have it embedded?

from owlapi_wrapper.