Comments (1)
Done.
from cellranger-snakemake.
Related Issues (8)
- Default to using the biomart file found in ./bin, recreate in workdir if asked. HOT 1
- Create tSNE, UMAP plots as pdfs HOT 4
- Add FindAllMarkers and create various heatmaps HOT 1
- Add EnrichR after FindAllMarkers HOT 1
- Add filtration of various 'noisy' genes HOT 2
- Cleanup intermediate files (could be done using native snakemake nomenclature)
- Restore %dopar% functionality for main processing loop of seurat objects. HOT 3
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