Comments (16)
FYI:
figshare
offers 20GB of free storage to account owners. I am thinking of hosting sample data (for users without an account on Cheyenne) under my figshare account if there are no objections
from ncar-python-tutorial.
This is the parent directory of the data -- /glade/collections/cmip/CMIP6/CMIP/NASA-GISS/GISS-E2-1-G/historical/r1i1p1f1/Omon/thetao/gn/v20180827
I will take some time this afternoon to dig through the subdirectories to the data used.
**Full path
/glade/collections/cmip/CMIP6/CMIP/NASA-GISS/GISS-E2-1-G/historical/r1i1p1f1/Omon/thetao/gn/v20180827/thetao/thetao_Omon_GISS-E2-1-G_historical_r1i1p1f1_gn_185001-187012.nc
from ncar-python-tutorial.
@jukent, do we need all the 20 years worth of data or can we get a subset from this file?
from ncar-python-tutorial.
We can subset it, but we're not nearing that 20GB limit - so is it something we should do anyway?
from ncar-python-tutorial.
What download speeds can we expect from figshare?
from ncar-python-tutorial.
why not use the CGD ftp location we had setup for exactly this thing?
from ncar-python-tutorial.
Does the CGD ftp server allow anonymous download? Who has permissions to upload?
from ncar-python-tutorial.
why not use the CGD ftp location we had setup for exactly this thing?
@matt-long, I've not looked into this yet. I will give it a try before exploring the figshare option
Does the CGD ftp server allow anonymous download? Who has permissions to upload?
@kmpaul, this needs further exploration
I am going to looking into the CGD's ftp server option this afternoon, and I will let you know how this goes
from ncar-python-tutorial.
Does the CGD ftp server allow anonymous download?
Yes. As a smoke test you can try downloading this script:
wget ftp://ftp.cgd.ucar.edu/archive/aletheia-data/test.sh
Who has permissions to upload?
As far as I know, Matt and I are among users with upload permissions.
from ncar-python-tutorial.
I just figured the FTP details out, and I am in favor of using the ftp server for sample data instead of figshare.
from ncar-python-tutorial.
Good. Regarding @kmpaul question,
Who has permissions to upload?
Ultimately, I think we want to setup some sort of version control and have a means of getting input from other groups, but include a gate-keeper. I don't know what the best solutions in this regard are.
from ncar-python-tutorial.
I think a small ftp service with versioned files might be something Jeff DLB’s division should provide. They do this on a regular basis for things like the RDA.
from ncar-python-tutorial.
I limited the data to 5 years, it is now < 600 MB,
The path on Cheyenne is:
/glade/u/home/jkent/tutorial_data/thetao_Omon_historical_GISS-E2-1-G_r1i1p1f1_gn_185001-185512.nc
from ncar-python-tutorial.
This is fixed in #61
*** Found an existing Conda installation in: /opt/conda/bin/conda
*** (23:16:18) Step 1/6: Skipping Conda installation
*** (23:16:18) Step 2/6: Updating `base` environment
*** (23:17:48) Step 3/6: Checking for environment name conflict
*** (23:17:48) Step 4/6: Creating `python-tutorial` environment (this can take several minutes)
*** (23:21:00) Step 5/6: Running post build script for `base` environment
*** (23:22:29) Step 6/6: Running post build script for `python-tutorial` environment (this can take several minutes)
*** (23:25:45) Setup completed successfully.
==> For changes to take effect, close and re-open your current shell. <==
Currently downloading tutorial data
Progress: |--------------------------------------------------| 0.0% /root/project/data/NOAA_NCDC_ERSST_v3b_SST.nc
Progress: |██████--------------------------------------------| 12.5% /root/project/data/air_temperature.nc
Progress: |████████████--------------------------------------| 25.0% /root/project/data/co2.nc
Progress: |███████████████████-------------------------------| 37.5% /root/project/data/moc.nc
Progress: |█████████████████████████-------------------------| 50.0% /root/project/data/rasm.nc
Progress: |███████████████████████████████-------------------| 62.5% /root/project/data/sst_indices.csv
Progress: |██████████████████████████████████████------------| 75.0% /root/project/data/thetao_Omon_historical_GISS-E2-1-G_r1i1p1f1_gn_185001-185512.nc
Progress: |████████████████████████████████████████████------| 87.5% /root/project/data/woa2013v2-O2-thermocline-ann.nc
Progress: |██████████████████████████████████████████████████| 100.0%
from ncar-python-tutorial.
Cheyenne/Casper
$ ./setup/configure --download
Creating symlink to existing/local tutorial data directory: /glade/work/abanihi/aletheia-data/tutorial-data
ln -sf /glade/work/abanihi/aletheia-data/tutorial-data/* /glade/work/abanihi/devel/ncar/NCAR-pangeo-tutorial/data/
$ ls -lh data
total 8.0K
lrwxrwxrwx 1 abanihi ncar 66 Sep 12 18:25 air_temperature.nc -> /glade/work/abanihi/aletheia-data/tutorial-data/air_temperature.nc
lrwxrwxrwx 1 abanihi ncar 54 Sep 12 18:25 co2.nc -> /glade/work/abanihi/aletheia-data/tutorial-data/co2.nc
lrwxrwxrwx 1 abanihi ncar 54 Sep 12 18:25 moc.nc -> /glade/work/abanihi/aletheia-data/tutorial-data/moc.nc
lrwxrwxrwx 1 abanihi ncar 74 Sep 12 18:25 NOAA_NCDC_ERSST_v3b_SST.nc -> /glade/work/abanihi/aletheia-data/tutorial-data/NOAA_NCDC_ERSST_v3b_SST.nc
lrwxrwxrwx 1 abanihi ncar 55 Sep 12 18:25 rasm.nc -> /glade/work/abanihi/aletheia-data/tutorial-data/rasm.nc
-rw-r--r-- 1 abanihi ncar 0 Sep 5 12:11 README.md
lrwxrwxrwx 1 abanihi ncar 63 Sep 12 18:25 sst_indices.csv -> /glade/work/abanihi/aletheia-data/tutorial-data/sst_indices.csv
lrwxrwxrwx 1 abanihi ncar 111 Sep 12 18:25 thetao_Omon_historical_GISS-E2-1-G_r1i1p1f1_gn_185001-185512.nc -> /glade/work/abanihi/aletheia-data/tutorial-data/thetao_Omon_historical_GISS-E2-1-G_r1i1p1f1_gn_185001-185512.nc
lrwxrwxrwx 1 abanihi ncar 79 Sep 12 18:25 woa2013v2-O2-thermocline-ann.nc -> /glade/work/abanihi/aletheia-data/tutorial-data/woa2013v2-O2-thermocline-ann.nc
Personal Laptop
$ ./setup/configure --download
Currently downloading tutorial data
Progress: |--------------------------------------------------| 0.0% /Users/abanihi/devel/ncar/NCAR-pangeo-tutorial/data/NOAA_NCDC_ERSST_v3b_SST.nc
Progress: |██████--------------------------------------------| 12.5% /Users/abanihi/devel/ncar/NCAR-pangeo-tutorial/data/air_temperature.nc
Progress: |████████████--------------------------------------| 25.0% /Users/abanihi/devel/ncar/NCAR-pangeo-tutorial/data/co2.nc
Progress: |███████████████████-------------------------------| 37.5% /Users/abanihi/devel/ncar/NCAR-pangeo-tutorial/data/moc.nc
Progress: |█████████████████████████-------------------------| 50.0% /Users/abanihi/devel/ncar/NCAR-pangeo-tutorial/data/rasm.nc
Progress: |███████████████████████████████-------------------| 62.5% /Users/abanihi/devel/ncar/NCAR-pangeo-tutorial/data/sst_indices.csv
Progress: |██████████████████████████████████████------------| 75.0% /Users/abanihi/devel/ncar/NCAR-pangeo-tutorial/data/thetao_Omon_historical_GISS-E2-1-G_r1i1p1f1_gn_185001-185512.nc
Progress: |████████████████████████████████████████████------| 87.5% /Users/abanihi/devel/ncar/NCAR-pangeo-tutorial/data/woa2013v2-O2-thermocline-ann.nc
Progress: |██████████████████████████████████████████████████| 100.0%
$ ls -lh data
total 1308688
-rw-r--r-- 1 abanihi CIT\Domain Users 42M Sep 12 18:27 NOAA_NCDC_ERSST_v3b_SST.nc
-rw-r--r-- 1 abanihi CIT\Domain Users 0B Aug 28 18:22 README.md
-rw-r--r-- 1 abanihi CIT\Domain Users 7.4M Sep 12 18:27 air_temperature.nc
-rw-r--r-- 1 abanihi CIT\Domain Users 487K Sep 12 18:27 co2.nc
-rw-r--r-- 1 abanihi CIT\Domain Users 108K Sep 12 18:27 moc.nc
-rw-r--r-- 1 abanihi CIT\Domain Users 16M Sep 12 18:27 rasm.nc
-rw-r--r-- 1 abanihi CIT\Domain Users 25K Sep 12 18:27 sst_indices.csv
-rw-r--r-- 1 abanihi CIT\Domain Users 570M Sep 12 18:27 thetao_Omon_historical_GISS-E2-1-G_r1i1p1f1_gn_185001-185512.nc
-rw-r--r-- 1 abanihi CIT\Domain Users 268K Sep 12 18:27 woa2013v2-O2-thermocline-ann.nc
Hobart
$ ./setup/configure --download
Creating symlink to existing/local tutorial data directory: /ftp/archive/aletheia-data/tutorial-data
ln -sf /ftp/archive/aletheia-data/tutorial-data/* /scratch/cluster/abanihi/NCAR-pangeo-tutorial/data/
$ ls -lh data
total 12K
lrwxrwxrwx 1 abanihi cgdoce 59 Sep 12 18:28 air_temperature.nc -> /ftp/archive/aletheia-data/tutorial-data/air_temperature.nc
lrwxrwxrwx 1 abanihi cgdoce 47 Sep 12 18:28 co2.nc -> /ftp/archive/aletheia-data/tutorial-data/co2.nc
lrwxrwxrwx 1 abanihi cgdoce 47 Sep 12 18:28 moc.nc -> /ftp/archive/aletheia-data/tutorial-data/moc.nc
lrwxrwxrwx 1 abanihi cgdoce 67 Sep 12 18:28 NOAA_NCDC_ERSST_v3b_SST.nc -> /ftp/archive/aletheia-data/tutorial-data/NOAA_NCDC_ERSST_v3b_SST.nc
lrwxrwxrwx 1 abanihi cgdoce 48 Sep 12 18:28 rasm.nc -> /ftp/archive/aletheia-data/tutorial-data/rasm.nc
-rw-r--r-- 1 abanihi cgdoce 0 Sep 12 16:31 README.md
lrwxrwxrwx 1 abanihi cgdoce 56 Sep 12 18:28 sst_indices.csv -> /ftp/archive/aletheia-data/tutorial-data/sst_indices.csv
lrwxrwxrwx 1 abanihi cgdoce 104 Sep 12 18:28 thetao_Omon_historical_GISS-E2-1-G_r1i1p1f1_gn_185001-185512.nc -> /ftp/archive/aletheia-data/tutorial-data/thetao_Omon_historical_GISS-E2-1-G_r1i1p1f1_gn_185001-185512.nc
lrwxrwxrwx 1 abanihi cgdoce 72 Sep 12 18:28 woa2013v2-O2-thermocline-ann.nc -> /ftp/archive/aletheia-data/tutorial-data/woa2013v2-O2-thermocline-ann.nc
from ncar-python-tutorial.
Let me know whether this looks good and/or anything is missing.
from ncar-python-tutorial.
Related Issues (20)
- Change to a Nikola site HOT 2
- Finish 0-30 Tutorial Content HOT 12
- Remove old Jekyll site
- Re-use "old-contents"? HOT 1
- Announcement Update for Spring 2020 Tutorial HOT 2
- Setup Instructions HOT 6
- Virtual Tutorial To-Do List - Part 1
- Grammar changes HOT 3
- Short Tutorial Seminar Series HOT 4
- Tutorial announcements HOT 1
- conda activate drops user in /
- bash kernel set x?
- Support self-guided as well as in-person tutorials HOT 2
- Edit tutorial notebooks to address common questions
- Remove need to change/update the user's base environment HOT 1
- Remove event-specific information from repo and make stand-alone (self-guided) HOT 1
- Update Pangeo kernel on JHub and use for tutorial HOT 3
- Update ssh tunnel scripts with option to select a default environment to use HOT 7
- Pull SSH launch scripts into separate package HOT 5
- Curriculum for beginner, intermediate & advanced tracks? HOT 4
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from ncar-python-tutorial.