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229-e-corona-genome-analysis

Genome Analysis of 229-E COVID-19 strain

acam

This is the R package ACAM for cell annotation.

acamdata

alexa-seq

ALEXA-seq - alternative expression analysis by RNA-seq

apec

Single cell epigenomic clustering based on accessibility pattern

ascend

Analysis of Single Cell Expression, Normalization and Differential expression

autoencoder-clustering

Replication of "Auto-encoder Based Data Clustering" Song et al

awesome-deep-learning-single-cell-papers

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

barrelfish

Mirror of the official Barrelfish OS repository.

bcl2fastq

debian version of bcl2fastq 1.8.4 without examples

bioinformatics-workshop

RNA-seq Tutorial

biopython-coronavirus

Biopython Jupyter Notebook tutorial to characterize a small genome

bisque

An R toolkit for estimation of cell composition from bulk expression data

bp_2021_2

brockmanr

Brockman R package for analyzing k-mer representations of chromatin data

carldeboer.github.io

chip-seq-analysis

ChIP-seq analysis notes from Ming Tang

cidr

Clustering through Imputation and Dimensionality Reduction

cistopic

cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data

clustering-nips-2017

Code for "Is Simple Better?: Revisiting Simple Generative Models for Unsupervised Clustering" - Bayesian Deep Learning Workshop (NIPS 2017)

clustering-with-deep-learning

Generic implementation for clustering with deep learning : representation learning (DNN) + clustering

cobaya

Code for Bayesian Analysis in Cosmology

comparison_batch_remove_softwares

code used for article - Comparison of Scanpy-based algorithms to remove the batch effect of single-cell RNA-seq data

content

Official content for Harvard CS109

conv_arithmetic

A technical report on convolution arithmetic in the context of deep learning

covid-19-data-analysis

If you want to analyze Covid 19 data on your own from reliable sources using the same software used by professional data scientists this is for you

covid-19-rna-sequences-analysis

Analysis of COVID-19 sequences in different Variants of the COVID-19 Virus.

covid-genome-computational-analysis

Computational predictions of protein attributes associated with COVID-19 using Data Science techniques

covid-sequence-analysis-workflow