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awesome-single-cell

List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bitesize-rust

A tiny project written in Rust as a collaborative effort between Nathan Fox and David Grossman. Intended to be small in scope, fun, and educational.

cfs-reu-2018

Work from the Computing For Structure REU 2018 at the University of Miami

dnd-webapp

dotfiles

dropbox-uploader

Dropbox Uploader is a BASH script which can be used to upload, download, list or delete files from Dropbox, an online file sharing, synchronization and backup service.

elzar-example

geometry

A collection of code to generate, draw, and manipulate geometric figures

golang-sandbox

intro-to-chipseq

Intro to ChIPseq using HPC

ipython

Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.

metaneighbor

A method to rapidly assess cell type identity using both functional and random gene sets

pairix

1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates

poincaremaps

The need to understand cell developmental processes has spawned a plethora of computational methods for discovering hierarchies from scRNAseq data. However, existing techniques are based on Euclidean geometry which is not an optimal choice for modeling complex cell trajectories with multiple branches. To overcome this fundamental representation issue we propose Poincaré maps, a method harnessing the power of hyperbolic geometry into the realm of single-cell data analysis.

pybigwig

A python extension for quick access to bigWig and bigBed files

rust_sandbox

Place for me to play with Rust. Originally to learn the language, and thereafter for experimentation.

single-cell-database

spacetraders

styleguide

My personal style guide and general standards. It's just here to keep myself honest.

tools

toy-projects

General repo to store small, one-shot projects made for fun.