Comments (2)
Hi,
I fixed this issue.
There was a mismatch in hdf5 version.
I successfully compiled dorado, but while running the basecaller I got following error:
> Creating basecall pipeline
HDF5-DIAG: Error detected in HDF5 (1.8.16) thread 0:
#000: H5G.c line 467 in H5Gopen2(): unable to open group
major: Symbol table
minor: Can't open object
#001: H5Gint.c line 320 in H5G__open_name(): group not found
major: Symbol table
minor: Object not found
#002: H5Gloc.c line 430 in H5G_loc_find(): can't find object
major: Symbol table
minor: Object not found
#003: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed
major: Symbol table
minor: Object not found
#004: H5Gtraverse.c line 641 in H5G_traverse_real(): traversal operator failed
major: Symbol table
minor: Callback failed
#005: H5Gloc.c line 385 in H5G_loc_find_cb(): object 'channel_id' doesn't exist
major: Symbol table
minor: Object not found
> Reads basecalled: 0
> Samples/s: 0.000000e+00
Unable to open the group "channel_id": (Symbol table) Object not found
Could it be fast5 format? I was able to basecall using bontio though with the same fast5 files
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Hi @singagan can you try with the latest release.
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