Comments (1)
By the way - I actually hit this problem whilst verifying the essentially the
same kind of bug in Jalview ;)
The original tree data comes from the reporter of
http://issues.jalview.org/browse/JAL-1313
The related problem in Jalview is that it uses a '' to escape a quote character
in a quoted node-name, but the problem is the parser doesn't actually
regenerate the quote afterwards (doh!). I'm planning to patch Jalview so it can
import a nodename string like ('mynode''quote''') as mynode'quote' - but I
wasn't sure if using this double-quote style escaping was actually permitted in
the NHX standard, so it would be good to clarify it!
Original comment by [email protected]
on 13 Jun 2013 at 5:45
- Added labels: ****
- Removed labels: ****
from forester.
Related Issues (11)
- minor ascii conversion error
- NPE in NodeData.getSequence()
- Typos in method names in PhylogenyMethods
- PhylogenyNode(string) constructor deprecated?
- forester 1027 cannot read tree from URL/Webservice
- Branch length scales are wrong in unrooted mode
- No method to set identifier for clade (PhylogenyNode)
- Release forester to Maven Central repository
- "Collapse species-specific subtree" command doesn't work in circular trees
- Parsed trees have incorrect info about speciations/duplications
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