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100-days-of-ml-code

100-Days-Of-ML-Code中文版

ariba

Antimicrobial Resistance Identification By Assembly

awesome-cancer-variant-databases

A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.

charger

Characterization of Germline variants

cnvkit

Copy number variant detection from targeted DNA sequencing

copykat

dndscv

dN/dS methods to quantify selection in cancer and somatic evolution

fda_scrna-seq

fgbio

Tools for working with genomic and high throughput sequencing data.

fishplot

Create timecourse "fish plots" that show changes in the clonal architecture of tumors

fuscia

Detection of chimeric transcripts (aka fusions) from barcoded single cell RNA-seq

fusioncatcher

Finder of Somatic Fusion Genes in RNA-seq data

gatk-docs

Documentation archive for GATK tools and workflows

gemini

a lightweight db framework for exploring genetic variation.

getitd

Software for FLT3-ITD detection and MRD monitoring assay

hmfgeneannotation

Determines the biallelic status of selected genes using SNV, indel and CNV data

ichorcna

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

learngit

learnpython

以撸代码的形式学习Python

lumpy-sv

lumpy: a general probabilistic framework for structural variant discovery

machine-learning-course

:speech_balloon: Machine Learning Course with Python

mltoolkit

msisensor

microsatellite instability detection using tumor only or paired tumor-normal data

mutsigextractor

An R package for extracting mutational signatures from vcf files

phandango

an interactive viewer for populations of bacterial genomes linked by a phylogeny

phylowgs

Application for inferring subclonal composition and evolution from whole-genome sequencing data.

pysankey2

Static Sankey diagrams with matplotlib

python-100-days

Python - 100天从新手到大师

scarhrd

svict

Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA