Comments (4)
Mxrcon
commented on August 26, 2024
1
Ok, Thanks for pointing that, this pr still need a lot of work before get merged!
from mtbseq-nf.
Mxrcon
commented on August 26, 2024
concluded by bb404c3
from mtbseq-nf.
abhi18av
commented on August 26, 2024
@Mxrcon , on the right hand side of GH, there's a section called "Linked pull request" (I linked this issue as an example) - then you don't need to manually close the linked issue.
If PR is merged, it'll be closed by itself.
from mtbseq-nf.
abhi18av
commented on August 26, 2024
I'm re-opening this issue and unlinking the PR (I linked for demoing) since the structure isn't there for individual modules.
A structure means,
params
process def
test
from mtbseq-nf.
Related Issues (20)
- Create a documentation website HOT 3
- Add nextflow_schema file
- Add github issue/contribution templates
- Generate nextflow schema
- Add optional trimmomatic module
- [BUG] conda package name HOT 2
- Publish Logs HOT 2
- Allow the users to specify their own MTB references HOT 1
- [BUG] cannot create regular file ‘GenomeAnalysisTK.jar’ File exists - conda executor HOT 6
- Add QC_REPORTS workflow HOT 4
- Automatically download and extract the GATK jar
- Evaluate upgrading the project to use mtbseq-1.0.4 HOT 10
- Submit a multi-container image to biocontainers HOT 2
- Evaluate the use of hard-coded exit status as a fallback for mtbseq statuses HOT 5
- Consider creating a custom container with all the necessary deps. HOT 1
- GATK/Nextflow Java environment differences HOT 4
- Error related to log4j2 (with gatk `v3.8.0`) HOT 6
- Refactor the pipeline to rely upon the nf-core template
- Update the resistance database
- Single-end reads HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from mtbseq-nf.