mxhit-j Goto Github PK

alphafold

Open source code for AlphaFold.

autorccar

OpenCV Python Neural Network Autonomous RC Car

basic-introduction-to-python

Introduction to Mathematics and Python using Neuroscience Examples

braessparadox

Braess Paradox usually occurs under user-optimization and never under system-optimization. We are testing that in food web and ecosystem balance, and by extension in social behavior in animals. Perturbation of food web networks can mitigate cascade extinctions which follow a primary extinction, thus preventing loss of species and also checking for causality. We are also modifying the Braess topology using Hawk-Dove model to test social behavior in animals (eg. ants)

deeplabcut

DeepLabCut™ is an efficient method for 3D markerless pose estimation based on transfer learning with deep neural networks that achieves excellent results (i.e. you can match human labeling accuracy) with minimal training data (typically 50-200 frames). We demonstrate the versatility of this framework by tracking various body parts in multiple species across a broad collection of behaviors. The package is open source, fast, robust, and can be used to compute 3D pose estimates.

deeplabcut-1

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals

deeplabcut-workshop-materials

Workshop material for using DeepLabCut

glmhmm

glmspiketraintutorial

Simple tutorial on Gaussian and Poisson GLMs for single and multi-neuron spike train data

hello-world

jax

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

learn-genomics-in-unix

An interactive course on learning genomics/bioinformatics tasks in Linux.

mathtoolsforneuroscience

Materials for Mathematical Tools for Neuroscience course at Harvard (Neurobio 212)

meg_decoding

mjaiswal.github.io

:triangular_ruler: Jekyll theme for building a personal site, blog, project documentation, or portfolio.

molecular-modeling-and-simulations-bim-303-

Covering different modules including Forcefields, Energy Minimization Techniques and Molecular Dynamics.

mxhit-j.githhub.io

mxhit-j.github.io

Build a Jekyll blog in minutes, without touching the command line.

netlogo

turtles, patches, and links for kids, teachers, and scientists

pottersnewt

My second attempt at a website!

pynapple

PYthon Neural Analysis Package :pineapple:

rajaramanlabspikesorting

Spike sorting the auditory data files of the field crickets from Ashoka campus (ongoing).

scikit-bio

scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.

seaborn

Statistical data visualization using matplotlib

send-bulk-emails

Sending bulk emails through a python script

seurat

R toolkit for single cell genomics

spikesort

Spike sorting library implemented in Python/NumPy/PyTables

thonny

Python IDE for beginners

trajectorytools

A library with some utils to study and plot 2D trajectories developed by members of "de Polavieja lab" (Champalimaud Research, Lisbon, Portugal). Used in the study of animal collective behaviour.

worldcubeassociation.org

All of the code that runs on worldcubeassociation.org