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ananke2

Ananke2: A Python package for generating succinct indexes of microbial community structure

ananke_peerj

Scripts useful for reproducing the results in the Ananke manuscript published in PeerJ.

biom-format

The Biological Observation Matrix (BIOM) Format Project

bmcmicrobiology_preterm_birth

An in-progress analysis of the neonatal microbiome. This repository holds QIIME artifacts and Jupyter notebooks.

core

Freesewing is an open source platform for made-to-measure sewing patterns

data

Data API for freesewing

demo

Stand-along version of the freesewing demo

experimental_gingivitis

Data and scripts for an in-progress analysis of microbial taxonomic shifts in experimental gingivitis.

expressbetadiversity

Taxon- and phylogenetic-based beta diversity measures.

github-slideshow

A robot powered training repository :robot:

jdr_refractory_periodontitis

Data files for an in-progress manuscript on Refractory Periodontitis.

merge-conflicts

metahcr_v1

MetaHCR - Metagenomics on Hydrocarbon Resources

molecol_arctic_soil

Scripts and data files for the bulk of the analysis for an under-review manuscript surveying the effect of depth on the microbial community of Arctic soils.

mwhall.github.io

mygithubpage

pairiscope

A package that leverages bloom filters to store discretized microbial pair relationships in a relatively small memory footprint

peerj_culex_nigripalpus

Data and scripts for an in-progress analysis of the Culex nigripalpus microbiome from Floridian mosquitoes.

photobooth

q2-dada2

QIIME 2 plugin wrapping DADA2

q2-plotly

q2_ananke

Time-series clustering -- now for QIIME2!

quorem

QUOREM: Query, Unify, and Organize Research on the Ecology of Microorganisms

seqan

SeqAn's official repository.

site

The freesewing website

try_git

useful_qiime2_datasets

Just as it says on the tin.

vaware