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advanced-shiny

🤹 Shiny tips & tricks for improving your apps and solving common problems

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

beautiful-visualization-with-r

《R语言数据可视化之美》配套代码

crosslink

Network Visualization Tailed for Grouped Nodes

fio-m6a-immune

her2st

Her2 Breast Cancer Project

houshi

immuneresistance

This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources of T cell exclusion linked to immunotherapy clinical outcomes".

iobr

IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.

oralatlas

Code used in oral atlas manuscript

scmetabolism

Quantifying metabolism activity at the single-cell resolution

single-cell-tutorial

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

slc11a1

source code and data for paper

st-analysis

General notes and resources on how to analyze Spatial Transcriptomics data

stlearn

A novel machine learning pipeline to analyse spatial transcriptomics data

tabula-muris

Code and annotations for the Tabula Muris single-cell transcriptomic dataset.

uphyloplot2

Draw phylogenetic trees of tumor evolution