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cellcount.js's Issues

Improve blob detection interface

The blob-detection function, getConnectedComponents currently blocks for way too long. (Often making the browser ask if it should be killed).

  • Should be faster (algo is lifted directly from Wikipedia for now)
  • Async, with a progress-callback
  • Option for canceling the on-going operation (return false to the progress-callback?)
  • Nicer output.

Integrate jQuery

Helps with the UI-bound code.

(And the twitter bootstrap JS-code needs it...)

Add option for detecting background color

The output need to contain discern cells, other matertial and the background. As the background is usually white, it should be easy to detect, and thus allow us to find the "other material".

Actually count the cells found

Need some way to guess/determine/ask which found blobs are cells and which aren't.

I'm currently thinking about some kind of histogram, and using the blob, originally selected by the user, as the marker for the general size of cells in the image.

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