Name: Mitchell Stanton-Cook
Type: User
Company: @Xero
Bio: DevOps Enablement @Xero. Previously: Eng Director @Mastercard, Team Lead @Ladbrokes, Solutions Consultant @itoc. Likes dev, ops, sec, ci, cd, clouds
Twitter: mscook
Location: Brisbane, Australia
Blog: https://pipelin.es/
Mitchell Stanton-Cook's Projects
Nanning SWC 07 September 2015
Archiving of NGS data
B2L allelic variation
Got an antibiotic resistance problem? Fetch Beta-Lactamase sequences from the NCBI
Client-side Banzai
A no fuss next-generation sequencing analysis stack bootstrapping tool
Banzai is a Microbial Genomics Next Generation Sequencing (NGS) Pipeline Tool developed within Dr Scott Beatsonβs Group at the University of Queensland
BanzaiDB is a tool for pairing Microbial Genomics Next Generation Sequencing (NGS) analysis with a NoSQL database.
Docker image to build elastic/beats v 7.0.0 for Raspberry Pi
Recipes for Banzai-EasyBuild
NGS submission for Humans
Coders Club is a monthly meeting in the Beatson Group aiming to provide better software development practices
We're increasingly using CONTIGuator in our work! Here are some tools/wrappers. Eventually we should look at getting these incorporated into the CONTIGuator core.
Curriculum Vitae of Mitchell Jon Stanton-Cook
Get reads in SRA quickly!
Don't be a numnuts
Invertible DNA switch frequency counter
.files, including ~/.osx β sensible hacker defaults for OS X
Adds RethinkDB support to Flask http://rethinkdb.com
Manage complete (bacterial genomes) from NCBI
Description on how I configured the installation and Security of Raspberry Pi and how I keep it fit for use and purpose.
Brew recipes for Banzai Pipeline dependencies
Scientific formulae for the Homebrew package manager
Compare multiple images reporting similarity
This module if for reading the MAF file
Pelican based blog
High throughput sequencing analysis tools
Get Nesoni nway results into a database and provide useful query functions
Manipulation of the Nesoni nway with pandas