Comments (3)
Hello,
This error happened while inStrain was creating the runtime report, a text document that summarizes runtime efficiency and how long certain steps took to run. InStrain creates this report after closing the log, so any errors aren't saved in the log.
You can definitely still use the output. If you're comfortable sharing your log file (logger.log
) I'd be happy to see what's causing the bug and fix it. Feel free to email it to me if you'd prefer as well.
Best,
Matt
from instrain.
from instrain.
Thank you for sending over the log. I looked into this problem, and it results from the fact that some of your sequences have semi-colons in the header names (;
). This interferes with the way the logs are parsed.
Fixing this issue turned out to be pretty complicated, so I decided not to pursue it. The log file made at the end is really only necessary for troubleshooting runtimes anyways.
If you really do want this log file for some reason, replacing the semi-colons with some other character in your fasta headers will do the trick.
Best,
Matt
from instrain.
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from instrain.