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api-examples

Allen Institute API usage examples

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

box-plots-sklearn

An implementation of some of the tools used by the winner of the box plots competition using scikit-learn.

caffo-coursera

A repository of my Coursera latex code and notes

cell2location

Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

cellity

cellranger

10x Genomics Single Cell 3' Gene Expression and VDJ Assembly

cellrouter

Reconstruction of complex single-cell trajectories using CellRouter

cellsegm

An automated MATLAB tool for segmentation of surface stained cells.

cite-seq-count

Small script that allows to count TAGS from a CITE-seq experiment

course-resources-ml-with-experts-budgets

Further student resources for DrivenData's 'Machine Learning with the Experts: School Budgets' DataCamp course.

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

data.table

R's data.table package extends data.frame:

datasciencectacontent

repository for Community Mentor content related to the Johns Hopkins University Data Science Specialization on Coursera

datasharing

The Leek group guide to data sharing

de-analysis

dropest

Pipeline for initial analysis of droplet-based single-cell RNA-seq data

exdata_plotting1

Plotting Assignment 1 for Exploratory Data Analysis

flowcytometryanalysisusingr

fullstack-course4

Example code for HTML, CSS, and Javascript for Web Developers Coursera Course

granatum

hca_heart

This is the official repository for the Human Cell Atlas Heart project.

icy-kernel

Icy kernel module

linkedin-skill-assessments-quizzes

Full reference of LinkedIn answers 2022 for skill assessments (aws-lambda, rest-api, javascript, react, git, html, jquery, mongodb, java, Go, python, machine-learning, power-point) linkedin excel test lösungen, linkedin machine learning test LinkedIn test questions and answers

mast

Tools and methods for analysis of single cell assay data in R

metadata_analysis_code_final

Second round of analysis with improved protocols

monocle3

mpicbg

Fiji module for image transformation and related algorithms

phate

PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

picard

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.