Comments (3)
I'll look into why these files are failing to be made into BLAST databases. They look like normal files but I may have to do some checks for consistency.
from bad_mutations.
There are missing proteins: header but not sequence. Once removed the the
database can be made.
On Sun, Nov 8, 2015 at 4:53 PM, Tom Kono [email protected] wrote:
I'll look into why these files are failing to be made into BLAST
databases. They look like normal files but I may have to do some checks for
consistency.—
Reply to this email directly or view it on GitHub
#9 (comment)
.
Justin Fay
Associate Professor of Genetics
Washington University School of Medicine
Rm 5526, Center for Genome Sciences
4444 Forest Park Pkwy, St. Louis, MO 63108
Ph: 314.747.1808 Fax: 314.362.7855
from bad_mutations.
Fixed in e24ea8e
from bad_mutations.
Related Issues (20)
- Skip sequences with ambiguous nucleotides HOT 1
- Off-by-one error in HyPhy script? HOT 1
- Add command for dowloading in Mannual HOT 1
- Fail gracefully when no BLAST hits HOT 1
- makeblastdb HOT 1
- No output written to output dir with silent error HOT 3
- Fail nicely when "required" arguments are not specified
- Add Filtering of Species Databases
- Sanitize sequence names before alignment HOT 1
- Add Logistic Regression to Prediction
- Doesn't find HyPhy properly
- BAD_Mutations Incorrectly Back-translates from PASTA HOT 1
- The logistic P value is only valid for the 41 genomes
- Fetch XML ParseError HOT 5
- Multiple Trees in File HOT 6
- Fetch only the latest CDS for each species
- The XML document has moved HOT 2
- Compile Bug - Won't work on test data HOT 5
- Compile - include SNP names? HOT 1
- BUG: HOT 3
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