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License: Apache License 2.0
Brain imAgiNg Analysis iN Arcana (Banana): brain imaging analysis workflows implemented in the Arcana framework
License: Apache License 2.0
The PipelineTester appears to be running the pipeline to be tested twice instead of once
Because of Fix's strange versioning (e.g. 1.06) it isn't parsed property (e.g. 1.6)
Currently, ANTS and FLIRT transforms are specified as having a generic 'text_mat_format'. These should be made tool-specific to avoid mistaking one for the other
The preparation step performed in the MriStudy base class is somewhat confused with the preprocessing steps performed in contrast-specific subclasses. Need to sort out the flow here, perhaps by creating a dummy preprocessing pipeline in the base class that can be overwritten in subclasses
All FSL pipeline nodes should explicitly set their FSLOUTPUTTYPE so as not to rely on the environment variable being set to NIFTI_GZ (or something else)
The NL reg to MNI space in fMRI is assumed to happen against the T1 scan that is typically passed to coreg_ref_brain. However, this should be done in a separate T1 study and then combined with the fMRI using a MultiStudy class
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