Gaps in protein caused by deformations about molstar HOT 6 CLOSED

Both option require changes to the core. I added the first option of showing the gaps, see 1f60d88.

To draw the cartoon if the backbone atoms are further apart one would need to change the 3 in

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Hi @brianjimenez, do you have an example file? Mol* tries to find gaps/chains breaks and display them as dashed lines between the stem resodues.

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For example the one attached. There is an extreme deformation of the tip of the protein partner and in the peptide too.
top_1.pdb.zip

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We currently don't show the dashed-lines when the residue numbers are consecutive, but we could, see below. Would that be what you want? Third option would be to still draw the cartoon.

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Option 3: Draw cartoon if polymer bond is <5A. Might be good to show breaks with dashed-lines instead.

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Any of the proposed options is amazing and would work. Could you please share a couple of snippets how to accomplish it? Thanks again for your help and quick answers, beautiful piece of software btw.

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