modelturnedgeek Goto Github PK

alphaflow

AlphaFold Meets Flow Matching for Generating Protein Ensembles

alphafold

Open source code for AlphaFold.

amas

Calculate summary statistics and manipulate multiple sequence alignments

archs4py

Python package to load and query ARCHS4 data

arxiv-vanity

Renders papers from arXiv as responsive web pages so you don't have to squint at a PDF.

auto-gpt

An experimental open-source attempt to make GPT-4 fully autonomous.

aws-batch-arch-for-protein-folding

aws-healthcare-lifescience-ai-ml-sample-notebooks

bartsmiles

BARTSmiles, generative masked language model for molecular representations

bio-diffusion

A PyTorch hub of denoising diffusion probabilistic models designed to generate novel biological data

borg-land

🧠 Horizon AI Template - Trendiest Open-source ChatGPT UI AI Template & Starter Kit for React, NextJS & Chakra UI

bx-python

Tools for manipulating biological data, particularly multiple sequence alignments

cdsfold

chatbot-application-in-react

ChatBot Application Made with Node.js, React, OpenAI, and ChatGPT

ddpm-ipa-protein-generation

Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequence Generation with Equivariant Denoising Diffusion Probabilistic Models"

deepchain-apps

A library for deploying App on deepchain.bio

deepevolve

Rapid hyperparameter discovery for neural nets using genetic algorithms

deepseek-coder

DeepSeek Coder: Let the Code Write Itself

diffdock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

diffsbdd

A Euclidean diffusion model for structure-based drug design.

eternabench

Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.

evo

DNA foundation modeling from molecular to genome scale

generrna

gromacs

Public/backup repository of the GROMACS molecular simulation toolkit. Please do not mine the metadata blindly; we use https://gitlab.com/gromacs/gromacs for code review and issue tracking.

invariant-point-attention

Implementation of Invariant Point Attention, used for coordinate refinement in the structure module of Alphafold2, as a standalone Pytorch module

kaggle-api

Official Kaggle API

kalign

A fast multiple sequence alignment program.

lineardpparser

linear-time dynamic programming dependency parser

linearfold

The new source code of the LinearFold, linear-time prediction for RNA secondary structures

longevity-genie

A model that should answer questions about genes and variants