Comments (1)
Unfortunately, we are phasing out Model-SEED-core and no longer supporting it.
The ModelSEED installation is being replaced by the DOE Knowledgebase.
On Jan 28, 2014, at 3:31 AM, byji [email protected] wrote:
When I configure the configure file,
bji@/opt/local/Model-SEED-core$ ./bin/ms-config reload ./config/mySetting.conf
rm -f Source/.o Linux/mfatoolkit
make: ** No rule to make target Source/driver.o', needed byMFATOOLKIT'. Stop.
MFAToolkit compilation failed!
Model SEED Configuration Successful!
bji@dhcp-239-072/opt/local/Model-SEED-core$It showed that the MFATOOLKIT compilation error. So how to solve it.
If it not solved, when we reconstruct the model using mdl-reconstruct, it will generate errors as following:
Creating problem directory: 1
Creating list of inactive reactions: /opt/local/Model-SEED-core/data/ReactionDB/MFAToolkitOutputFiles/1/InactiveModelReactions.txt
Printing gapfilling parameters in : /opt/local/Model-SEED-core/data/ReactionDB/MFAToolkitOutputFiles/1/CompleteGapfillingParameters.txt
Running runFBAStudy
Using problem directory: 1
Creating the model file: /opt/local/Model-SEED-core/data/ReactionDB/MFAToolkitOutputFiles/1/Seed416276.5.1.tbl
Creating biochemistry provenance files
Running FBA
Whoops! We encountered an unrecoverable error.Could not find MFAToolkit executable
View error using the "ms-lasterror" command.
So how to fix it?
Thank you for help!
—
Reply to this email directly or view it on GitHub.
from model-seed-core.
Related Issues (20)
- Feature request: source of annotation for reactions
- mdl-loadbiomass has stopped working HOT 3
- mdl-autocomplete crashes HOT 6
- ./fba-checkgrowth and MetaboliteProduction.txt HOT 1
- Saved FVA results are invalid after model is changed HOT 1
- Error Running mdl-autocomplete HOT 6
- Autocomplete not filling gaps with new biomass HOT 1
- object rights not working, perhaps because of case mismatch
- Why is mdl-loadmodel having http request timeouts?
- Error Accessing Model Information HOT 7
- Behavior of the mdl-createmodel command HOT 3
- Segmentation fault with new biomass HOT 1
- ModelSEED commands aren't working HOT 3
- New fba function fails
- generating model IDs
- Use of FIGMODEL Table in MSSupport
- No argument list returned HOT 3
- Autocompletion Failing
- ms login error( 502 Bad Gateway)
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from model-seed-core.